Artemisinin Partial Resistance in Sub-Saharan Africa: Epidemiological Patterns, Molecular Markers, and Implications for Malaria Control
Abstract:
Artemisinin
partial resistance (ART-R) represents a growing concern for malaria control in
Sub-Saharan Africa. This narrative review synthesizes current evidence on the
epidemiology, molecular markers, therapeutic efficacy, transmission dynamics,
and surveillance of ART-R. Structured searches of peer-reviewed literature and
grey sources published between 2020 and 2025 were conducted, focusing on
clinical studies of artemisinin-based combination therapy (ACT) efficacy,
PfKelch13 (PfK13) mutations, and surveillance reports. Data were extracted
descriptively and synthesized thematically across four domains: emergence
patterns, molecular markers and phenotypic expression, treatment efficacy and
partner drug susceptibility, and transmission and surveillance capacity.
Validated PfK13 mutations associated with ART-R, including R561H, C469Y, A675V,
and R622I, have emerged independently across Sub-Saharan African countries. While
delayed parasite clearance is observed with these mutations, first-line ACTs
continue to show high cure rates in many settings, reflecting the combined
activity of artemisinin derivatives and partner drugs. Candidate PfK13 mutations and markers
of altered partner drug susceptibility have also been reported, highlighting
potential emerging vulnerabilities in the ACT framework. Prolonged parasite
clearance may increase the window of transmission, particularly in low to
moderate transmission settings. Surveillance capacity is expanding but remains
uneven, with gaps in genomic monitoring, timely reporting, and integration into
policy processes. Overall, ART-R in Sub-Saharan Africa remains focal and of low
prevalence, with limited evidence of widespread clinical impact. Strengthening
integrated molecular and therapeutic surveillance, improving data-to-policy
translation, and implementing targeted interventions in high-risk areas are
critical to prevent wider dissemination and sustain ACT effectiveness, thereby
supporting malaria control gains across the region.
References:
[1]. World
Health Organization, 2025, Malaria, Available from: https://www.who.int/news-room/fact-sheets/detail/malaria
[2]. Beke,
O. A. H., Assi, S. B., Kokrasset, A. P. H., Dibo, K. J. D., Tanoh, M. A.,
Danho, M., Remoué, F., Koudou, G. B., Poinsignon, A., 2023, Implication of
agricultural practices in the micro-geographic heterogeneity of malaria
transmission in Bouna, Côte d’Ivoire, Malaria Journal, 22(1), https://doi.org/10.1186/s12936-023-04748-3
[3]. Beloconi,
A., Nyawanda, B. O., Bigogo, G., Khagayi, S., Obor, D., Danquah, I., Kariuki,
S., Munga, S., Vounatsou, P., 2023, Malaria, climate variability, and
interventions: modelling transmission dynamics, Scientific Reports,
13(1), https://doi.org/10.1038/s41598-023-33868-8
[4]. Namubiru,
C., 2025, Institutional quality, aid flows, and malaria burden: a geospatial
analysis of sub-Saharan Africa, Malaria Journal, 24(1), https://doi.org/10.1186/s12936-025-05592-3
[5]. World
Health Organization, 2025, Malaria: Artemisinin partial resistance, https://www.who.int/news-room/questions-and-answers/item/artemisinin-resistance
[6]. Oxborough,
R. M., Chilito, K. L. F., Tokponnon, F., Messenger, L. A., 2024, Malaria vector
control in sub-Saharan Africa: complex trade-offs to combat the growing threat
of insecticide resistance, The Lancet Planetary Health, 8(10), https://doi.org/10.1016/S2542-5196(24)00172-4
[7]. Oyegbade,
S. A., Mameh, E. O., Balogun, D. O., Aririguzoh, V. G. O., Akinduti, P. A.,
2025, Emerging Plasmodium falciparum K13 gene mutation to artemisinin-based
combination therapies and partner drugs among malaria-infected population in
sub-Saharan Africa, Parasites, Hosts and Diseases, 63(2), https://doi.org/10.3347/PHD.24053
[8]. Conrad,
M. D., Asua, V., Garg, S., Giesbrecht, D., Niaré, K., Smith, S., Namuganga, J.
F., Katairo, T., Legac, J., Crudale, R. M., Tumwebaze, P. K., Nsobya, S. L., et
al., 2023, Evolution of Partial Resistance to Artemisinins in Malaria Parasites
in Uganda, New England Journal of Medicine, 389(8), https://doi.org/10.1056/NEJMoa2211803
[9]. Rosenthal,
P. J., Asua, V., Bailey, J. A., Conrad, M. D., Ishengoma, D. S., Kamya, M. R.,
Rasmussen, C., Tadesse, F. G., Uwimana, A., Fidock, D. A., 2024, The emergence
of artemisinin partial resistance in Africa: how do we respond?, The Lancet
Infectious Diseases, 24(9), https://doi.org/10.1016/S1473-3099(24)00141-5
[10]. Ajogbasile,
F. V., Oluniyi, P. E., Kayode, A. T., Akano, K. O., Adegboyega, B. B., Philip,
C., Ogbulafor, N., et al., 2022, Molecular profiling of the artemisinin
resistance Kelch 13 gene in Plasmodium falciparum from Nigeria, PLOS ONE,
17(2), https://doi.org/10.1371/journal.pone.0264548
[11]. Matrevi,
S. A., Tandoh, K. Z., Bruku, S., Opoku-Agyeman, P., Adams, T., Ennuson, N. A.,
Asare, B., Hagan, O. C. K., et al., 2022, Novel pfk13 polymorphisms in
Plasmodium falciparum population in Ghana, Scientific Reports, 12(1), https://doi.org/10.1038/s41598-022-11790-9
[12]. Bergmann,
C., Van Loon, W., Habarugira, F., Tacoli, C., Jäger, J. C., Savelsberg, D.,
Nshimiyimana, F., Rwamugema, E., Mbarushimana, D., et al., 2021, Increase in
Kelch 13 Polymorphisms in Plasmodium falciparum, Southern Rwanda, Emerging
Infectious Diseases, 27(1), https://doi.org/10.3201/eid2701.203527
[13]. Osoti,
V., Wamae, K., Musau, M. M., Magudha, J. B., Ndwiga, L., Gichuki, P. M., Okoyo,
C., Rosebella, K., et al., 2025, Serial cross-sectional school surveys
identifies C469Y, P553L, R561H and A675V kelch 13 mutations associated with
artemisinin resistance in Western Kenya, Scientific Reports, 15(1), https://doi.org/10.1038/s41598-025-22286-7
[14]. Ishengoma,
D. S., Mandara, C. I., Bakari, C., Fola, A. A., Madebe, R. A., Seth, M. D.,
Francis, F., Buguzi, C. C., Moshi, R., et al., 2024, Evidence of artemisinin
partial resistance in northwestern Tanzania: clinical and molecular markers of
resistance, The Lancet Infectious Diseases, 24(11), https://doi.org/10.1016/S1473-3099(24)00362-1
[15]. Mihreteab,
S., Anderson, K., Fuente, I. M. D. L., Sutherland, C. J., Smith, D.,
Cunningham, J., Beshir, K. B., Cheng, Q., 2025, The spread of molecular markers
of artemisinin partial resistance and diagnostic evasion in Eritrea: a
retrospective molecular epidemiology study, The Lancet Microbe, 6(2), https://doi.org/10.1016/S2666-5247(24)00172-1
[16]. Uwimana,
A., Legrand, E., Stokes, B. H., Ndikumana, J. L. M., Warsame, M., Umulisa, N.,
Ngamije, D., et al., 2020, Emergence and clonal expansion of in vitro
artemisinin-resistant Plasmodium falciparum kelch13 R561H mutant parasites in
Rwanda, Nature Medicine, 26(10), https://doi.org/10.1038/s41591-020-1005-2
[17]. Xu, W.,
Zhang, X., Chen, H., Zhang, J., Lu, Q., Ruan, W., Wang, X., 2023, Molecular
markers associated with drug resistance in Plasmodium falciparum parasites in
central Africa between 2016 and 2021, Frontiers in Public Health, 11, https://doi.org/10.3389/fpubh.2023.1239274
[18]. Hanscheid,
T., Mahomed, S. M., Rebelo, M., Henriques, S. O., Grobusch, M. P., 2024,
Inaccurate communication in health sciences: The case of ‘partial artemisinin
resistance’ for the treatment of malaria, New Microbes and New Infections,
62, https://doi.org/10.1016/j.nmni.2024.101544
[19]. Angwe,
M. K., Mwebaza, N., Nsobya, S. L., Vudriko, P., Dralabu, S., Omali, D.,
Tumwebaze, M. A., Ocan, M., 2024, Day 3 parasitemia and Plasmodium falciparum
Kelch 13 mutations among uncomplicated malaria patients treated with
artemether-lumefantrine in Adjumani district, Uganda, PLOS ONE, 19(6), https://doi.org/10.1371/journal.pone.0305064
[20]. Balikagala,
B., Fukuda, N., Ikeda, M., Katuro, O. T., Tachibana, S.-I., Yamauchi, M., Opio,
W., Emoto, S., 2021, Evidence of Artemisinin-Resistant Malaria in Africa, New
England Journal of Medicine, 385(13), https://doi.org/10.1056/NEJMoa2101746
[21]. Milong
Melong, C. S., Peloewetse, E., Russo, G., Tamgue, O., Tchoumbougnang, F.,
Paganotti, G. M., 2024, An overview of artemisinin-resistant malaria and
associated Pfk13 gene mutations in Central Africa, Parasitology Research,
123(7), https://doi.org/10.1007/s00436-024-08301-2
[22]. Bohissou,
F. E. T., Nassa, G. J. W., Sondo, P., Rouamba, T., Inoue, J., Kaboré, B., Asua,
V., Held, J., Tinto, H., 2025, Spatio-temporal trends of artemisinin-based
combination therapy efficacy from 2010 to 2024 in sub-Saharan Africa: a
systematic review and meta-analysis, BMC infectious diseases, 25(1), https://doi.org/10.1186/s12879-025-12130-8
[23]. Shibeshi,
W., Alemkere, G., Mulu, A., Engidawork, E., 2021, Efficacy and safety of
artemisinin-based combination therapies for the treatment of uncomplicated
malaria in pediatrics: a systematic review and meta-analysis, BMC Infectious
Diseases, 21(1), https://doi.org/10.1186/s12879-021-06018-6
[24]. Ebong,
C., Sserwanga, A., Namuganga, J. F., Kapisi, J., Mpimbaza, A., Gonahasa, S.,
Asua, V., Gudoi, S., et al., 2021, Efficacy and safety of
artemether-lumefantrine and dihydroartemisinin-piperaquine for the treatment of
uncomplicated Plasmodium falciparum malaria and prevalence of molecular markers
associated with artemisinin and partner drug resistance in Uganda, Malaria
Journal, 20(1), https://doi.org/10.1186/s12936-021-04021-5
[25]. Issa,
M. S., Warsame, M., Mahamat, M. H. T., Saleh, I. D. M., Boulotigam, K.,
Djimrassengar, H., Issa, A. H., et al., 2023, Therapeutic efficacy of
artesunate-amodiaquine and artemether-lumefantrine for the treatment of
uncomplicated falciparum malaria in Chad: clinical and genetic surveillance, Malaria
Journal, 22(1), https://doi.org/10.1186/s12936-023-04644-w
[26]. Ngasala,
B. E., Chiduo, M. G., Mmbando, B. P., Francis, F. T., Bushukatale, S., Makene,
T., Mandara, C. I., et al., 2024, Efficacy and safety of
artemether-lumefantrine for the treatment of uncomplicated falciparum malaria
in mainland Tanzania, 2019, Malaria Journal, 23(1), https://doi.org/10.1186/s12936-024-04931-0
[27]. Ehrlich,
H. Y., Bei, A. K., Weinberger, D. M., Warren, J. L., Parikh, S., 2021, Mapping
partner drug resistance to guide antimalarial combination therapy policies in
sub-Saharan Africa, Proceedings of the National Academy of Sciences,
118(29), https://doi.org/10.1073/pnas.2100685118
[28]. Tumwebaze,
P. K., Conrad, M. D., Okitwi, M., Orena, S., Byaruhanga, O., Katairo, T.,
Legac, J., Garg, S., Giesbrecht, D., et al., 2022, Decreased susceptibility of
Plasmodium falciparum to both dihydroartemisinin and lumefantrine in northern
Uganda, Nature Communications, 13(1), https://doi.org/10.1038/s41467-022-33873-x
[29]. Bwire,
G. M., Ngasala, B., Mikomangwa, W. P., Kilonzi, M., Kamuhabwa, A. A. R., 2020,
Detection of mutations associated with artemisinin resistance at k13-propeller
gene and a near complete return of chloroquine susceptible falciparum malaria
in Southeast of Tanzania, Scientific Reports, 10(1), https://doi.org/10.1038/s41598-020-60549-7
[30]. Mlugu,
E. M., Dondorp, A. M., Barnes, K. I., 2024, Resistant malaria parasites gaining
momentum in Africa, The Lancet Infectious Diseases, 24(11), https://doi.org/10.1016/S1473-3099(24)00413-4
[31]. Proellochs,
N. I., Andolina, C., Ramjith, J., Stoter, R., Van Gemert, G.-J., Graumans, W.,
Campino, S., Vanheer, L. N., Okitwi, M., Tumwebaze, P. K., Conrad, M. D.,
Clark, T. G., Fidock, D. A., Ménard, D., Mok, S., Bousema, T., 2025, Gametocyte
production and transmission fitness of African and Asian Plasmodium falciparum
isolates with differential susceptibility to artemisinins, Antimicrobial Agents
and Chemotherapy, 69(6), https://doi.org/10.1128/aac.01930-24
[32]. Masserey,
T., Lee, T., Golumbeanu, M., Shattock, A. J., Kelly, S. L., Hastings, I. M.,
Penny, M. A., 2022, The influence of biological, epidemiological, and treatment
factors on the establishment and spread of drug-resistant Plasmodium
falciparum, eLife, 11, https://doi.org/10.7554/eLife.77634
[33]. Abdul-Ghani,
R., Mahdy, M. A. K., Beier, J. C., Basco, L. K., 2017, Hidden reservoir of
resistant parasites: the missing link in the elimination of falciparum malaria,
Infectious Diseases of Poverty, 6(1), https://doi.org/10.1186/s40249-016-0227-5
[34]. Liu,
Y., Liang, X., Li, J., Chen, J., Huang, H., Zheng, Y., He, J., Ehapo, C. S.,
Eyi, U. M., Yang, P., Lin, L., et al., 2022, Molecular Surveillance of
Artemisinin-Based Combination Therapies Resistance in Plasmodium falciparum
Parasites from Bioko Island, Equatorial Guinea, Microbiology Spectrum,
10(3), https://doi.org/10.1128/spectrum.00413-22
[35]. Agboli,
E., Bitew, M., Malaka, C. N., Kallon, T. M. P. S., Jalloh, A. M. S., Yankonde,
B., Shempela, D. M., et al., 2025, Building Pathogen Genomic Sequencing
Capacity in Africa: Centre for Epidemic Response and Innovation Fellowship, Tropical
Medicine and Infectious Disease, 10(4), https://doi.org/10.3390/tropicalmed10040090
[36]. Kaburi,
B. B., Harries, M., Hauri, A. M., Kenu, E., Wyss, K., Silenou, B. C.,
Klett-Tammen, C. J., Ressing, C., Awolin, J., Lange, B., Krause, G., 2024,
Availability of published evidence on coverage, cost components, and funding
support for digitalisation of infectious disease surveillance in Africa,
2003–2022: a systematic review, BMC Public Health, 24(1), https://doi.org/10.1186/s12889-024-19205-2
[37]. Tindana,
P., Sekwo, D. E., Baatiema, L., Djimde, A., the Pathogen Genomics Diversity
Network, Africa (PDNA), 2024, Researchers’ perspectives on the integration of
molecular and genomic data into malaria elimination programmes in Africa: a
qualitative study, Malaria Journal, 23(1), https://doi.org/10.1186/s12936-024-05205-5
[38]. Alemayehu,
A. A., Castañeda Mogollón, D., Belay, S. G., Tesfa, H., Mohon, A. N.,
Balasingam, N., Bayih, A. G., Ashraf, S., Pillai, D. R., 2025, Expansion of the
Plasmodium falciparum Kelch13 R622I Mutation in Northwest Ethiopia, Open
Forum Infectious Diseases, 12(6), https://doi.org/10.1093/ofid/ofaf279
[39]. Ochola, R., 2025, The Case for Genomic Surveillance in Africa, Tropical Medicine and Infectious Disease, 10(5), https://doi.org/10.3390/tropicalmed10050129
